PHATRDRAFT_43680 (SAC3_GANP)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_43680 chr_2 (SAC3_GANP) 1171967 1177675 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0058

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nucleoporin_FG superfamily Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in... - 53.2047 3.87E-08 2 - 101 superfamily 257944
Nucleoporin_FG superfamily Nucleoporin FG repeat region; This family includes a number of FG repeats that are found in... - 53.2047 3.87E-08 2 - 101 superfamily 257944
ApoLp-III_like superfamily Apolipophorin-III and similar insect proteins; Exchangeable apolipoproteins play vital roles in the... - 44.9748 1.59E-05 676 - 773 superfamily 267466
SAC3_GANP SAC3/GANP/Nin1/mts3/eIF-3 p25 family; This large family includes diverse proteins involved in large... - 108.546 4.18E-26 221 - 537 multi-dom 251923
MAP7 MAP7 (E-MAP-115) family; The organisation of microtubules varies with the cell type and is... - 63.5778 2.70E-11 635 - 790 multi-dom 253312
CAF-1_p150 Chromatin assembly factor 1 complex p150 subunit, N-terminal; CAF-1_p150 is a polypeptide subunit... - 53.3331 8.07E-08 738 - 864 multi-dom 256525

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
21190 Not available 258590 324434 Not available Not available Not available 320063

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments