PHATRDRAFT_44116 tpr repeat:nb-arc:peptidasecaspase catalytic subunit p20:tetratricopeptide tpr_3:tetratricopeptide tpr_4:tetratricopeptide tpr_4 (TPR_12)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_44116	chr_3	tpr repeat:nb-arc:peptidasecaspase catalytic subunit p20:tetratricopeptide tpr_3:tetratricopeptide...	1024742	1027015	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0237

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0111	0.46	1.8 200000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	53.1528	1.46E-08	526 - 639	superfamily	238112
TPR superfamily		Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF...	-	53.1528	1.46E-08	526 - 639	superfamily	238112
RPN7 superfamily		26S proteasome subunit RPN7; RPN7 (known as the non ATPase regulatory subunit 6 in higher...	-	37.5506	0.00431008	656 - 716	superfamily	256084
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	40.8234	0.000130002	655 - 718	multi-dom	257749
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	40.8234	0.000130002	655 - 718	multi-dom	257749
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	40.8234	0.000130002	655 - 718	multi-dom	257749
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	40.8234	0.000130002	655 - 718	multi-dom	257749
TPR_12		Tetratricopeptide repeat; Tetratricopeptide repeat.	-	40.8234	0.000130002	655 - 718	multi-dom	257749

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
9425		Not available	193745	299463	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments