PHATRDRAFT_44207 (Anticodon_Ia_like superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_44207	chr_3	(Anticodon_Ia_like superfamily)	1309915	1311720	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0150

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0142	0.29	510 3600

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Anticodon_Ia_like superfamily		Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is...	-	48.327	5.77E-07	78 - 125	superfamily	264512
RRM		RNA recognition motif; RNA recognition motif.	cl17169	35.6472	0.00538049	224 - 301	specific	214636
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	35.6472	0.00538049	224 - 301	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
7450		Not available	181589	193181	204041	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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