PHATRDRAFT_44312 (SMC_prok_B)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_44312	chr_4	(SMC_prok_B)	203693	208169	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0184

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0248	0.29	190 490

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF1631 superfamily		Protein of unknown function (DUF1631); The members of this family are sequences derived from a...	-	39.9512	0.00519346	335 - 455	superfamily	254434
MIT_CorA-like superfamily		metal ion transporter CorA-like divalent cation transporter superfamily; This superfamily of...	-	38.4601	0.00847604	835 - 936	superfamily	260436
BAR superfamily		The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects...	-	38.0545	0.00880815	933 - 998	superfamily	264507
SMC_prok_B		chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of...	-	79.7152	4.35E-15	320 - 1020	multi-dom	233757

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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