PHATRDRAFT_45116 (SNF2_N)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_45116 chr_6 (SNF2_N) 240835 246581 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0348

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0245
 0.30

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 51.4697 1.84E-07 1671 - 1786 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 51.4697 1.84E-07 1671 - 1786 superfamily 238034
RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... cl17238 45.1292 1.07E-05 1594 - 1635 specific 238093
RING superfamily RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... - 45.1292 1.07E-05 1594 - 1635 superfamily 266579
SNF2_N SNF2 family N-terminal domain; This domain is found in proteins involved in a variety of processes... - 149.359 4.73E-39 601 - 891 multi-dom 249654
HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and... - 84.4012 1.55E-16 1686 - 1805 multi-dom 223627

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 267368 239230 454252 Cre06.g304000.t1.2 AT2G40770.1 348412

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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