PHATRDRAFT_45485 (REC)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_45485 chr_7 (REC) 322726 325327 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0279

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... cl19078 98.0317 8.23E-24 699 - 807 specific 238088
REC superfamily Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB),... - 98.0317 8.23E-24 699 - 807 superfamily 267431
HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example:... cl00075 64.5902 2.56E-12 514 - 665 specific 238030
HATPase_c superfamily Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example:... - 64.5902 2.56E-12 514 - 665 superfamily 260175
HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed... cl00080 57.9928 2.22E-10 395 - 459 specific 119399
HisKA superfamily Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed... - 57.9928 2.22E-10 395 - 459 superfamily 260177
PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising... cl02459 35.4526 0.00861312 265 - 299 specific 214512
PAS_8 superfamily PAS domain; PAS domain. - 35.4526 0.00861312 265 - 299 superfamily 261295
phoR_proteo phosphate regulon sensor kinase PhoR; Members of this protein family are the regulatory histidine... - 77.2504 1.57E-15 261 - 650 multi-dom 234074
AtoS FOG: PAS/PAC domain [Signal transduction mechanisms] - 50.618 4.40E-07 152 - 361 multi-dom 225112

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 264614 261849 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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