PHATRDRAFT_45601 synaptobrevin like 1 (Synaptobrevin)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_45601 chr_7 synaptobrevin like 1 (Synaptobrevin) 660667 661578 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0325

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0061
 0.31

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 64.868 6.88E-14 164 - 252 superfamily 250253
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 64.868 6.88E-14 164 - 252 superfamily 250253
Longin superfamily Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for... - 63.7326 2.16E-13 83 - 147 superfamily 258059
Longin superfamily Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for... - 63.7326 2.16E-13 83 - 147 superfamily 258059
SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] - 49.3493 1.26E-07 31 - 217 multi-dom 227472

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263074 Not available 224045 225484 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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