PHATRDRAFT_45953 emb2473 (embryo defective 2473) gtp binding calcium ion binding (Ras_like_GTPase superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_45953 chr_8 emb2473 (embryo defective 2473) gtp binding calcium ion binding (Ras_like_GTPase superfamily) 762705 765646 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0338

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0001
 0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Ras_like_GTPase Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... cl17170 64.3999 6.44E-12 568 - 724 specific 206648
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 138.239 3.07E-37 25 - 246 superfamily 266525
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 138.239 3.07E-37 25 - 246 superfamily 266525
EF_assoc_2 superfamily EF hand associated; This region predominantly appears near EF-hands (pfam00036) in GTP-binding... - 46.0242 3.73E-06 308 - 364 superfamily 254755
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 43.7959 6.07E-05 565 - 716 multi-dom 224025
COG1100 GTPase SAR1 and related small G proteins [General function prediction only] - 43.7959 6.07E-05 565 - 716 multi-dom 224025

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263012 Not available 274669 259582 Not available Cre08.g375200.t1.2 AT5G27540.2 476915

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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