PHATRDRAFT_46402 rna polymerase beta subunit (LUC7)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_46402	chr_10	rna polymerase beta subunit (LUC7)	229014	230435	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0488

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0010	0.55	28000 1600000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LUC7 superfamily		U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and...	-	41.4901	0.000199368	345 - 389	superfamily	227527
LUC7		LUC7 N_terminus; This family contains the N terminal region of several LUC7 protein homologues and...	-	54.7294	9.35E-09	3 - 384	multi-dom	251790

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
20799		Not available	213680	264030	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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