PHATRDRAFT_46493 choline dehydrogenase (BetA)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_46493	chr_10	choline dehydrogenase (BetA)	503864	506227	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0347

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0139	0.32	4.7 98

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
GMC_oxred_C superfamily		GMC oxidoreductase; This domain found associated with pfam00732.	-	100.923	1.34E-24	629 - 765	superfamily	253079
GMC_oxred_C superfamily		GMC oxidoreductase; This domain found associated with pfam00732.	-	100.923	1.34E-24	629 - 765	superfamily	253079
NAD_binding_8 superfamily		NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain.	-	98.8935	3.18E-23	233 - 471	superfamily	267487
BetA		Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	-	215.396	8.62E-61	114 - 781	multi-dom	225186

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	362244

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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