PHATRDRAFT_47011 (PLN03142)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47011 chr_12 (PLN03142) 173071 177594 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0080

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 115.413 2.99E-29 631 - 753 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 115.413 2.99E-29 631 - 753 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 105.497 1.20E-25 341 - 486 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 105.497 1.20E-25 341 - 486 superfamily 266587
HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... cl00082 45.6876 5.66E-06 30 - 95 specific 238037
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 45.6876 5.66E-06 30 - 95 superfamily 260179
SLIDE superfamily SLIDE; The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices... - 92.6468 1.66E-21 1064 - 1177 superfamily 255188
HAND superfamily HAND; The HAND domain adopts a secondary structure consisting of four alpha helices, three of which... - 38.8053 0.00143662 900 - 1005 superfamily 255187
PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional - 969.27 0 158 - 1221 multi-dom 215601

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 136062 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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