PHATRDRAFT_47114 lipopolysaccharide a protein (CAP10 superfamily)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_47114	chr_12	lipopolysaccharide a protein (CAP10 superfamily)	497599	500340	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0367

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0213	0.25	17 87

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAP10 superfamily		Putative lipopolysaccharide-modifying enzyme; Putative lipopolysaccharide-modifying enzyme.	-	53.1946	7.15E-08	477 - 544	superfamily	214773
Glyco_tranf_2_4		Glycosyl transferase family 2; Members of this family of prokaryotic proteins include putative...	cl11394	47.5881	1.35E-06	633 - 740	specific	258002
Glyco_tranf_GTA_type superfamily		Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a...	-	47.5881	1.35E-06	633 - 740	superfamily	264347

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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