PHATRDRAFT_47281 pentatricopeptiderepeat-containing protein
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_47281	chr_13	pentatricopeptiderepeat-containing protein	172436	174508	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0244

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0063	0.36	810 2000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PPR_2 superfamily		PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found...	-	41.2342	6.89E-05	269 - 311	superfamily	261658
RNase_Zc3h12a superfamily		Zc3h12a-like Ribonuclease NYN domain; This domain is found in the Zc3h12a protein which has shown...	-	41.5268	0.000123699	482 - 633	superfamily	256772

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	244629	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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