PHATRDRAFT_47737 arginine serine-rich splicing factor (RRM_Srp1p_AtRSp31_like)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47737 chr_14 arginine serine-rich splicing factor (RRM_Srp1p_AtRSp31_like) 687283 688650 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0300

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0092
 0.51

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_Srp1p_AtRSp31_like RNA recognition motif found in fission yeast pre-mRNA-splicing factor Srp1p, Arabidopsis thaliana... cl17169 104.064 8.76E-28 143 - 212 specific 240679
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 37.6697 0.000539724 34 - 111 superfamily 266524
RRM_SF RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... cl17169 37.6697 0.000539724 34 - 111 specific 240668
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 37.6697 0.000539724 34 - 111 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
35274 Not available 259001 260386 Not available Cre16.g674250.t1.2 AT3G61860.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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