PHATRDRAFT_47912 pa and ring finger domain protein (RING)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47912 chr_15 pa and ring finger domain protein (RING) 415837 417048 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0311

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0001
 0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... cl17238 57.4556 6.63E-11 279 - 325 specific 238093
RING superfamily RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60... - 57.4556 6.63E-11 279 - 325 superfamily 266579
PA superfamily PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of... - 48.8752 2.52E-07 38 - 165 superfamily 263543

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 131612 Not available Not available AT1G71980.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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