PHATRDRAFT_48519 ph-response regulator protein pala rim20 (ALIX_LYPXL_bnd)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48519 chr_18 ph-response regulator protein pala rim20 (ALIX_LYPXL_bnd) 87505 90661 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0286

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0046
 0.37

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members... cl00153 35.5127 0.0086019 915 - 952 specific 238116
UBA superfamily Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members... - 35.5127 0.0086019 915 - 952 superfamily 260220
BRO1_Alix_like superfamily Protein-interacting Bro1-like domain of mammalian Alix and related domains; This superfamily... - 106.202 1.01E-24 57 - 494 superfamily 265441
V_Alix_like superfamily Protein-interacting V-domain of mammalian Alix and related domains; This superfamily contains the V... - 98.5684 2.47E-22 525 - 834 superfamily 187408
ALIX_LYPXL_bnd ALIX V-shaped domain binding to HIV; The binding of the LYPxL motif of late HIV p6Gag and EIAV... - 176.343 4.45E-49 551 - 838 multi-dom 258205

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 268140 325389 Not available Not available Not available 509757

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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