PHATRDRAFT_48676 (Trichoplein)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48676 chr_18 (Trichoplein) 564514 579933 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0068

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0007
 0.60

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SAP SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... cl02640 40.058 0.00147697 826 - 860 specific 251054
SAP superfamily SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... - 40.058 0.00147697 826 - 860 superfamily 261387
SAP SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... cl02640 40.058 0.00147697 826 - 860 specific 251054
SAP superfamily SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... - 40.058 0.00147697 826 - 860 superfamily 261387
DUF1682 superfamily Protein of unknown function (DUF1682); The members of this family are all hypothetical eukaryotic... - 48.023 3.84E-05 3720 - 3793 superfamily 254533
SAP SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... cl02640 40.058 0.00147697 826 - 860 specific 251054
SAP superfamily SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... - 40.058 0.00147697 826 - 860 superfamily 261387
DUF2058 superfamily Uncharacterized protein conserved in bacteria (DUF2058); This domain, found in various prokaryotic... - 42.9738 0.00039535 3534 - 3612 superfamily 260830
SAP SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... cl02640 40.058 0.00147697 826 - 860 specific 251054
SAP superfamily SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... - 40.058 0.00147697 826 - 860 superfamily 261387

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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