PHATRDRAFT_48747 (JmjC)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_48747 chr_19 (JmjC) 133274 135560 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0432

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0116
 0.40

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
JmjC superfamily JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins... - 138.968 9.42E-39 272 - 391 superfamily 202224
JmjC superfamily JmjC domain, hydroxylase; The JmjC domain belongs to the Cupin superfamily. JmjC-domain proteins... - 138.968 9.42E-39 272 - 391 superfamily 202224
JmjN Small domain found in the jumonji family of transcription factors; To date, this domain always co-... cl15840 72.2954 9.46E-16 53 - 94 specific 128818
JmjN superfamily jmjN domain; jmjN domain. - 72.2954 9.46E-16 53 - 94 superfamily 210240
zf-C5HC2 superfamily C5HC2 zinc finger; Predicted zinc finger with eight potential zinc ligand binding residues. This... - 58.4306 8.13E-11 494 - 545 superfamily 251625
zf-C5HC2 superfamily C5HC2 zinc finger; Predicted zinc finger with eight potential zinc ligand binding residues. This... - 58.4306 8.13E-11 494 - 545 superfamily 251625

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
2137 Not available 211284 259682 433479 Cre12.g514250.t1.2 AT4G20400.1 397432

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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