PHATRDRAFT_48875 la_aedalla protein homolog (la ribonucleoprotein) (la autoantigen homolog) (LAM)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_48875	chr_19	la_aedalla protein homolog (la ribonucleoprotein) (la autoantigen homolog) (LAM)	544834	546663	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0174

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0084	0.29	46 59

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LAM		LA motif RNA-binding domain; This domain is found at the N-terminus of La RNA-binding proteins as...	cl02755	71.7941	2.09E-15	121 - 186	specific	153396
LAM superfamily		LA motif RNA-binding domain; This domain is found at the N-terminus of La RNA-binding proteins as...	-	71.7941	2.09E-15	121 - 186	superfamily	261431
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	61.194	1.09E-11	252 - 330	superfamily	266524

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	236060	295747	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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