PHATRDRAFT_49127 (RanBD_family)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49127 chr_20 (RanBD_family) 671963 673504 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0036

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0034
 0.35

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RanBD_family Ran-binding domain; The RanBD is present in RanBD1, RanBD2, RanBD3, Nuc2, and Nuc50. Most of these... cl17171 63.4589 3.13E-12 356 - 448 specific 241232
PH-like superfamily Pleckstrin homology-like domain; The PH-like family includes the PH domain, both the Shc-like and... - 63.4589 3.13E-12 356 - 448 superfamily 266526
NUP50 superfamily NUP50 (Nucleoporin 50 kDa); Nucleoporin 50 kDa (NUP50) acts as a cofactor for the importin-alpha:... - 41.1657 5.42E-05 4 - 79 superfamily 255103

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 51212 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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