PHATRDRAFT_49430 (UFD1 superfamily)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_49430	chr_22	(UFD1 superfamily)	231039	232538	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0294

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0081	0.30	0.00000017 120000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UFD1 superfamily		Ubiquitin fusion degradation protein UFD1; Post-translational ubiquitin-protein conjugates are...	-	72.9761	3.59E-15	93 - 356	superfamily	251761
UBQ superfamily		Ubiquitin-like proteins; Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins....	-	54.208	2.15E-09	420 - 497	superfamily	260222
DBINO superfamily		DNA-binding domain; DBINO is a DNA-binding domain found on global transcription activator SNF2L1...	-	36.4862	0.00331805	2 - 57	superfamily	258159

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
21955		Not available	189024	209789	Not available	Not available	Not available	497564

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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