PHATRDRAFT_49686 tetratricopeptide tpr_2 (TPR)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49686 chr_23 tetratricopeptide tpr_2 (TPR) 419374 421434 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0083

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0090
 0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 36.5892 0.00338655 592 - 656 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 36.5892 0.00338655 592 - 656 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 36.5892 0.00338655 592 - 656 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 36.5892 0.00338655 592 - 656 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 36.5892 0.00338655 592 - 656 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 36.5892 0.00338655 592 - 656 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 36.5892 0.00338655 592 - 656 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 36.5892 0.00338655 592 - 656 superfamily 238112
Biotinyl_lipoyl_domains superfamily Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the... - 42.7767 2.34E-05 87 - 159 superfamily 264355
TPR_12 Tetratricopeptide repeat; Tetratricopeptide repeat. - 40.8234 0.000105967 493 - 572 multi-dom 257749

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 175468 148096 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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