PHATRDRAFT_49801 synoviolin 1 (HRD1)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_49801	chr_24	synoviolin 1 (HRD1)	363488	365386	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0388

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0016	0.47	1 18000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RING		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	cl17238	61.6928	4.96E-12	410 - 455	specific	238093
RING superfamily		RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60...	-	61.6928	4.96E-12	410 - 455	superfamily	266579
HRD1		HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein...	-	105.438	2.67E-24	143 - 515	multi-dom	227568

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
24902		Not available	192595	321162	71786	Cre04.g217922.t1.1	AT3G16090.1	454953

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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