PHATRDRAFT_49814 (Rav1p_C superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49814 chr_24 (Rav1p_C superfamily) 426592 432696 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0040

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0090
 0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SH2 Src homology 2 (SH2) domain; In general, SH2 domains are involved in signal transduction; they bind... cl15255 43.2131 6.30E-05 1289 - 1323 specific 198173
SH2 superfamily Src homology 2 (SH2) domain; In general, SH2 domains are involved in signal transduction; they bind... - 43.2131 6.30E-05 1289 - 1323 superfamily 265655
Rav1p_C superfamily RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621... - 101.696 5.93E-22 437 - 597 superfamily 256917

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
11974 Not available Not available 246275 Not available Not available Not available 488618

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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