PHATRDRAFT_50183 rna polymerase sigma factor (Sig70-cyanoRpoD)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_50183 chr_27 rna polymerase sigma factor (Sig70-cyanoRpoD) 295615 296922 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0488

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0010
 0.55

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sigma70_r2 superfamily Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All... - 53.7342 2.27E-09 152 - 222 superfamily 252661
Sigma70_r2 superfamily Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All... - 53.7342 2.27E-09 152 - 222 superfamily 252661
Sigma70_r4 superfamily Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia... - 35.8641 0.00269275 388 - 421 superfamily 266592
Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family; This family includes a number of... - 135.837 2.39E-36 83 - 421 multi-dom 234082

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
6760 Not available 178549 307754 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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