PHATRDRAFT_51301 hla-b associated transcript 1 (DEADc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_51301 chr_32 hla-b associated transcript 1 (DEADc) 18534 20148 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0209

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 255.487 8.34E-83 47 - 251 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 255.487 8.34E-83 47 - 251 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 127.354 3.34E-35 267 - 392 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 127.354 3.34E-35 267 - 392 superfamily 238034
PTZ00424 helicase 45; Provisional - 252.44 4.31E-79 47 - 420 multi-dom 185609

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
269556 Not available 176347 239731 433653 Cre17.g719000.t1.2 AT5G11170.2 309277

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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