PHATRDRAFT_52539 succinate dehydrogenase (PLN00129)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_52539 chr_21 succinate dehydrogenase (PLN00129) 478379 479392 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0156

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0069
 0.42

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron... cl00159 33.5224 0.00852749 71 - 105 specific 238126
fer2 superfamily 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron... - 33.5224 0.00852749 71 - 105 superfamily 260226
Fer2_3 superfamily 2Fe-2S iron-sulfur cluster binding domain; The 2Fe-2S ferredoxin family have a general core... - 157.736 3.51E-48 42 - 148 superfamily 257488
Fer2_3 superfamily 2Fe-2S iron-sulfur cluster binding domain; The 2Fe-2S ferredoxin family have a general core... - 157.736 3.51E-48 42 - 148 superfamily 257488
Fer4_17 4Fe-4S dicluster domain; This family includes proteins containing domains which bind to iron-sulfur... cl19102 50.1804 1.21E-08 185 - 258 specific 257853
HCP_like superfamily The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (... - 50.1804 1.21E-08 185 - 258 superfamily 267455
PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit - 510.101 0 15 - 273 multi-dom 215067

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
32945 Not available 227880 320049 415062 Cre06.g264200.t1.2 AT3G27380.2 353902

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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