PHATRDRAFT_54192 structural maintenance of chromosomes 5 (Smc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54192 chr_3 structural maintenance of chromosomes 5 (Smc) 1008701 1012195 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0255

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0091
 0.41

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_SMC5_euk ATP-binding cassette domain of eukaryotic SMC5 proteins; The structural maintenance of chromosomes... cl17201 167.387 1.54E-46 21 - 189 specific 213244
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 167.387 1.54E-46 21 - 189 superfamily 266551
ABC_SMC5_euk ATP-binding cassette domain of eukaryotic SMC5 proteins; The structural maintenance of chromosomes... cl17201 167.387 1.54E-46 21 - 189 specific 213244
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 167.387 1.54E-46 21 - 189 superfamily 266551
ApoLp-III_like superfamily Apolipophorin-III and similar insect proteins; Exchangeable apolipoproteins play vital roles in the... - 45.713 3.60E-05 625 - 739 superfamily 267466
Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] - 207.645 7.22E-55 23 - 1074 multi-dom 224117

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
9851 Not available 193562 Not available 469686 Cre10.g440200.t1.1 AT5G15920.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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