PHATRDRAFT_54289 (PRK08565)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54289 chr_5 (PRK08565) 2903 6619 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0121

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0138
 0.26

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 1083.36 0 80 - 1206 superfamily 238353
RNA_pol_B_RPB2 superfamily RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 1083.36 0 80 - 1206 superfamily 238353
RNA_pol_Rpb2_1 superfamily RNA polymerase beta subunit; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 104.735 4.48E-25 228 - 411 superfamily 267831
RNA_pol_Rpb2_4 superfamily RNA polymerase Rpb2, domain 4; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 93.1266 2.24E-22 589 - 650 superfamily 113341
RNA_pol_Rpb2_5 superfamily RNA polymerase Rpb2, domain 5; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 56.0513 1.28E-09 675 - 724 superfamily 191029
RNA_pol_Rpb2_5 superfamily RNA polymerase Rpb2, domain 5; RNA polymerases catalyse the DNA dependent polymerization of RNA.... - 56.0513 1.28E-09 675 - 724 superfamily 191029
PRK08565 DNA-directed RNA polymerase subunit B; Provisional - 1037.22 0 67 - 1211 multi-dom 236291

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268010 Not available 277325 318148 456588 Cre02.g075150.t1.2 AT5G45140.1 340380

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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