PHATRDRAFT_54395 beta-ig-h3 fasciclin (COG2335)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_54395	chr_7	beta-ig-h3 fasciclin (COG2335)	38426	39819	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0100

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0121	0.14	4500 420

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Fasciclin		Fasciclin domain; This extracellular domain is found repeated four times in grasshopper fasciclin I...	cl02663	68.0524	5.48E-14	310 - 433	specific	251315
Fasciclin superfamily		Fasciclin domain; This extracellular domain is found repeated four times in grasshopper fasciclin I...	-	68.0524	5.48E-14	310 - 433	superfamily	261399
Fasciclin		Fasciclin domain; This extracellular domain is found repeated four times in grasshopper fasciclin I...	cl02663	68.0524	5.48E-14	310 - 433	specific	251315
Fasciclin superfamily		Fasciclin domain; This extracellular domain is found repeated four times in grasshopper fasciclin I...	-	68.0524	5.48E-14	310 - 433	superfamily	261399
COG2335		Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer...	-	102.464	1.18E-25	101 - 294	multi-dom	225214

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments