PHATRDRAFT_54642 cell division cycle proteinexpressed (CDC48)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_54642 chr_11 cell division cycle proteinexpressed (CDC48) 415261 417753 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0145

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0249
 0.32

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 116.091 1.06E-29 471 - 637 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 116.091 1.06E-29 471 - 637 superfamily 267297
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 116.091 1.06E-29 471 - 637 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 116.091 1.06E-29 471 - 637 superfamily 267297
CDC48_N superfamily Cell division protein 48 (CDC48), N-terminal domain; This domain has a double psi-beta barrel fold... - 95.344 3.44E-23 17 - 100 superfamily 251246
CDC48_N superfamily Cell division protein 48 (CDC48), N-terminal domain; This domain has a double psi-beta barrel fold... - 95.344 3.44E-23 17 - 100 superfamily 251246
CDC48_2 Cell division protein 48 (CDC48) domain 2; This domain has a double psi-beta barrel fold and... cl08380 64.1574 1.62E-12 123 - 183 specific 215011
CDC48_2 superfamily Cell division protein 48 (CDC48), domain 2; This domain has a double psi-beta barrel fold and... - 64.1574 1.62E-12 123 - 183 superfamily 263615
CDC48 AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members... - 736.716 0 30 - 758 multi-dom 233328

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 257596 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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