PHATRDRAFT_55176 chloroplast thylakoid 11 kda protein (Pentapeptide_4)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_55176	chr_28	chloroplast thylakoid 11 kda protein (Pentapeptide_4)	289819	290695	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0490

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0026	0.46	480 11000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Pentapeptide superfamily		Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The...	-	38.5187	0.000105445	161 - 200	superfamily	109845
Pentapeptide superfamily		Pentapeptide repeats (8 copies); These repeats are found in many cyanobacterial proteins. The...	-	38.5187	0.000105445	161 - 200	superfamily	109845
Pentapeptide_4		Pentapeptide repeats (9 copies); Pentapeptide repeats (9 copies).	-	46.9158	1.56E-07	122 - 198	multi-dom	257914

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
261226		Not available	191563	236291	442035	Cre09.g404000.t1.1	AT5G53490.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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