PHATRDRAFT_5537 principal rna polymerase sigma factor (Sigma70_r2)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_5537	chr_5	principal rna polymerase sigma factor (Sigma70_r2)	171814	172515	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0458

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0006	0.56	780 24000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Sigma70_r2 superfamily		Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All...	-	59.5122	1.89E-12	14 - 76	superfamily	252661
Sigma70_r2 superfamily		Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All...	-	59.5122	1.89E-12	14 - 76	superfamily	252661
Sigma70_r3 superfamily		Sigma-70 region 3; Region 3 forms a discrete compact three helical domain within the sigma-factor....	-	34.498	0.00309006	99 - 186	superfamily	146934

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
269327		Not available	267913	285907	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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