PHATRDRAFT_9701 rna binding motifx-linked 2 (RRM_ist3_like)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_9701	chr_2	rna binding motifx-linked 2 (RRM_ist3_like)	306787	307238	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0145

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0034	0.35	0.0082 2500

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RRM_ist3_like		RNA recognition motif in ist3 family; This subfamily corresponds to the RRM of the ist3 family that...	cl17169	173.208	1.11E-56	25 - 113	specific	240857
RRM_SF superfamily		RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (...	-	173.208	1.11E-56	25 - 113	superfamily	266524
COG0724		RNA-binding proteins (RRM domain) [General function prediction only]	-	76.5242	7.44E-18	36 - 118	multi-dom	223796

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
42380		Not available	165878	168305	433096	Cre06.g280550.t1.1	AT3G47120.1	262195

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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