10099 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10099 chr_15 HMGB-UBF_HMG-box 267536 268658 - HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7444310 Thaps10099.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0349

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0074
 0.37

Most Highly Correlated Transcripts

4108

hypothetical protein
0.8119

bd799

(bd799) ZnMc_pappalysin_like
0.7287

bd650

(bd650) NA
0.7154

24954

hypothetical protein
0.713

2058

hypothetical protein
0.713

bd759

(bd759) NA
0.6875

bd887

(bd887) NA
0.6856

bd816

(bd816) NA
0.6721

263917

0.6691

bd1076

(bd1076) NA
0.6555

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 59.5637 1.61E-11 62 - 147 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 59.5637 1.61E-11 62 - 147 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

Add comment

Log in to post comments