10254 COG1233Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10254	chr_15	COG1233	737956	739903	-	COG1233

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443966	Thaps10254.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0241

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0191	0.44	0.0000000058 2.1

Most Highly Correlated Transcripts

4372 hypothetical protein 0.8086	31928 ATM1 0.8045	8157 hypothetical protein 0.8041	25011 hypothetical protein 0.7984	270228 (Lhcx4) fucoxanthin chlorophyll a/c protein, LI818 clade 0.7942	20877 Ubiq_cyt_C_chap 0.792
37377 AOX 0.7915	21813 hypothetical protein 0.7824	6555 hypothetical protein 0.7817	5017 hypothetical protein 0.7806

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NAD_binding_8 superfamily		NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain.	-	110.282	6.63E-26	132 - 617	superfamily	267487
COG1233		Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and...	-	211.909	7.76E-61	129 - 635	multi-dom	224154

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	450714	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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