10929 NYD-SP28Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
10929	chr_18	NYD-SP28	472355	473881	+	NYD-SP28

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442996	Thaps10929.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0414

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0073	0.47	0.000041 8.2

Most Highly Correlated Transcripts

24682 hypothetical protein 0.9107	40200 TRX_reduct 0.909	9503 PTZ00121 0.9073	261324 PLN02724 0.8953	24482 hypothetical protein 0.8953	264774 FH2 superfamily 0.893
37497 cysE 0.89	21090 hypothetical protein 0.8895	268232 COG3899 0.8884	23560 hypothetical protein 0.8876

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
NYD-SP28 superfamily		Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic...	-	80.0093	3.71E-18	66 - 167	superfamily	258909
NYD-SP28 superfamily		Sperm tail; NYD-SP28 is expressed in a development-dependent manner, localized in spermatogenic...	-	80.0093	3.71E-18	66 - 167	superfamily	258909

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	63754	Not available	Not available	351042

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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