10940 RRM_UHM_SPF45_PUF60
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
10940 chr_18 RRM_UHM_SPF45_PUF60 497710 499310 + RRM_UHM_SPF45_PUF60

Synonyms

NCBI ID Ensembl Genomes exon ID
7443003 Thaps10940.2, Thaps10940.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0132

Most Highly Correlated Transcripts

268467

PP2Cc
0.9324

34590

nt_trans superfamily
0.9267

5117

Lipase_3
0.9235

11998

hypothetical protein
0.9231

21947

GlcNAc superfamily
0.9188

10894

hypothetical protein
0.9136

21304

hypothetical protein
0.913

268619

Ras_like_GTPase superfamily
0.9124

8489

GlcNAc superfamily
0.9124

24947

zf-DHHC
0.9098

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RRM_UHM_SPF45_PUF60 RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins; This... cl17169 118.097 3.84E-32 427 - 508 specific 240820
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 118.097 3.84E-32 427 - 508 superfamily 266524

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43109 PHATRDRAFT_43109 272174 70621 Not available Not available Not available 255134

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0003676 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

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