11118 EFhThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11118	chr_19a_19	EFh	187478	188414	-	EFh

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449891	Thaps11118.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0277

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0006	0.41	0.00092 110

Most Highly Correlated Transcripts

bd779 (bd779) SCP superfamily 0.8049	17854 HemeO 0.801	bd1888 (bd1888) NA 0.6782	261407 NAD_binding_8 superfamily 0.6695	1543 hypothetical protein 0.6468	10598 hypothetical protein 0.6437
37288 PLN02487 0.6394	23292 Membrane-FADS-like superfamily 0.6288	12070 (NDK1) NDPk_I 0.6286	6524 phytoene_desat 0.6269

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
EFh superfamily		EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal...	-	67.5729	8.94E-15	227 - 286	superfamily	238008
EFh superfamily		EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal...	-	67.5729	8.94E-15	227 - 286	superfamily	238008
EF-hand_7		EF-hand domain pair; EF-hand domain pair.	-	57.7788	3.52E-11	235 - 286	multi-dom	257819

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	223056	169431	450300	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005509 -

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