11179 TGT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11179 chr_19a_19 TGT 357852 359745 - TGT

Synonyms

NCBI ID Ensembl Genomes exon ID
7446306 Thaps11179.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0225

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0053
 0.56

Most Highly Correlated Transcripts

5690

YdcF-like
0.8552

21265

hypothetical protein
0.8411

25485

hypothetical protein
0.8385

263872

PRK14329
0.8327

35239

CPSF_A
0.8299

7066

hypothetical protein
0.8284

264548

FusA
0.8195

5797

ThTPase
0.8194

20682

hypothetical protein
0.8145

31932

hypothetical protein
0.814

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TGT Queuine tRNA-ribosyltransferase; This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29,... cl19224 87.769 1.62E-19 433 - 628 specific 250806
TGT superfamily Queuine tRNA-ribosyltransferase; This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29,... - 87.769 1.62E-19 433 - 628 superfamily 267577

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43387 PHATRDRAFT_43387 270610 322825 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006400 GO:0008479 GO:0008616 -

GO:0006400

tRNA modification

Details: 
The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically.
GO Category: 
BP

GO:0008479

queuine tRNA-ribosyltransferase activity

Details: 
Catalysis of the reaction: tRNA guanine + queuine = tRNA queuine + guanine.
GO Category: 
MF

GO:0008616

queuosine biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of queuosines, any of a series of nucleosides found in tRNA and having an additional pentenyl ring added via an NH group to the methyl group of 7-methylguanosine. The pentenyl ring may carry other substituents.
GO Category: 
BP

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