11302 RCC1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11302 chr_19b_31 RCC1 118845 121151 + RCC1

Synonyms

NCBI ID Ensembl Genomes exon ID
7451809 Thaps11302.2, Thaps11302.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0433

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0003
 0.47

Most Highly Correlated Transcripts

bd790

(bd790) ABCC_MRP_domain2
0.9037

bd1662

(bd1662) TIGR00367
0.8168

bd1893

(bd1893) NA
0.8159

bd176

(bd176) PP2Cc
0.8103

bd463

(bd463) Aa_trans superfamily
0.8085

32481

HDc superfamily
0.8026

38391

hypothetical protein
0.7984

9963

ATS1
0.7752

bd793

(bd793) NA
0.7689

586

PTZ00018
0.7666

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 69.0927 1.75E-14 219 - 268 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 69.0927 1.75E-14 219 - 268 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 69.0927 1.75E-14 219 - 268 superfamily 249843
RCC1 superfamily Regulator of chromosome condensation (RCC1) repeat; Regulator of chromosome condensation (RCC1)... - 69.0927 1.75E-14 219 - 268 superfamily 249843

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008766 GO:0016881 GO:0018169 -

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

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