11562 Herpes_BLLF1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11562	chr_20	Herpes_BLLF1	489096	501304	-	Herpes_BLLF1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448551	Thaps11562.50, Thaps11562.23, Thaps11562.11, Thaps11562.19, Thaps11562.3, Thaps11562.34, Thaps11562.9, Thaps11562.4, Thaps11562.28, Thaps11562.18, Thaps11562.40, Thaps11562.20, Thaps11562.17, Thaps11562.14, Thaps11562.46, Thaps11562.29, Thaps11562.32, Thaps11562.43, Thaps11562.13, Thaps11562.39, Thaps11562.22, Thaps11562.45, Thaps11562.12, Thaps11562.31, Thaps11562.44, Thaps11562.56, Thaps11562.26, Thaps11562.7, Thaps11562.24, Thaps11562.21, Thaps11562.41, Thaps11562.57, Thaps11562.60, Thaps11562.49, Thaps11562.38, Thaps11562.15, Thaps11562.47, Thaps11562.37, Thaps11562.5, Thaps11562.35, Thaps11562.58, Thaps11562.52, Thaps11562.33, Thaps11562.16, Thaps11562.30, Thaps11562.55, Thaps11562.54, Thaps11562.8, Thaps11562.53, Thaps11562.51, Thaps11562.42, Thaps11562.6, Thaps11562.27, Thaps11562.48, Thaps11562.25, Thaps11562.10, Thaps11562.36, Thaps11562.1, Thaps11562.2, Thaps11562.61, Thaps11562.59

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0233

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0291	0.48	30000 2800

Most Highly Correlated Transcripts

bd816 (bd816) NA 0.8725	bd824 (bd824) NA 0.8335	bd153 (bd153) NA 0.8267	bd759 (bd759) NA 0.809	bd632 (bd632) NA 0.8075	9345 hypothetical protein 0.8049
bd1875 (bd1875) NA 0.7935	bd788 (bd788) NA 0.7931	10961 hypothetical protein 0.7913	3981 hypothetical protein 0.775

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Herpes_BLLF1		Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral...	-	65.1833	9.85E-11	1185 - 1573	multi-dom	253014

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004339 -

Add comment

Log in to post comments