11623 HSF_DNA-bind superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11623 chr_20 HSF_DNA-bind superfamily 685378 685960 + HSF_DNA-bind superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443636 Thaps11623.2, Thaps11623.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0279

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0006
 0.41

Most Highly Correlated Transcripts

4108

hypothetical protein
0.937

bd153

(bd153) NA
0.8456

bd630

(bd630) NA
0.8336

3981

hypothetical protein
0.8208

bd810

(bd810) NA
0.8069

bd816

(bd816) NA
0.7941

bd1237

(bd1237) 3a01204
0.7884

7416

hypothetical protein
0.772

bd933

(bd933) NA
0.772

bd1890

(bd1890) NA
0.7602

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 60.5224 1.96E-12 12 - 92 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

Add comment

Log in to post comments