11707 VDE superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11707 chr_22 VDE superfamily 195162 197314 + VDE superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443682 Thaps11707.3, Thaps11707.1, Thaps11707.4, Thaps11707.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0024

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0267
 0.26

Most Highly Correlated Transcripts

11557

PhyH superfamily
0.9293

261608

PLN02585
0.9246

264901

(Ppx1) PLN02576
0.9118

3884

hypothetical protein
0.9104

270281

hypothetical protein
0.8984

1049

MviM
0.8978

10882

hypothetical protein
0.8974

2846

FDH_GDH_like superfamily
0.8973

37615

NADB_Rossmann superfamily
0.8963

2465

hypothetical protein
0.8949

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
VDE superfamily Violaxanthin de-epoxidase (VDE); This family represents a conserved region approximately 150... - 91.4413 7.38E-20 142 - 489 superfamily 262831

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_45846 PHATRDRAFT_45846 207471 252938 439910 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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