11913 TatD_DNAseThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11913	chr_22	TatD_DNAse	877538	878755	+	TatD_DNAse

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449422	Thaps11913.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0491

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0019	0.40	0.000000047 0.0044

Most Highly Correlated Transcripts

37497 cysE 0.8739	13448 Sec1 0.8671	18392 RabGAP-TBC 0.8602	32782 MPN superfamily 0.8533	261278 GRX_GRXh_1_2_like 0.8527	36995 LplA 0.8475
21090 hypothetical protein 0.8434	16114 PLN02350 0.8395	16295 FBPase 0.8379	23815 hypothetical protein 0.8372

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TatD_DNAse		TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase...	cl00281	159.276	1.29E-45	152 - 402	specific	238635
metallo-dependent_hydrolases superfamily		Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large...	-	159.276	1.29E-45	152 - 402	superfamily	260323

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_35150	PHATRDRAFT_35150	193613	Not available	72031	Cre03.g169800.t1.2	Not available	495397

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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