1344 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1344 chr_1 SCP superfamily 1281992 1284118 + SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451441 Thaps1344.1, Thaps1344.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0381

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0017
 0.42

Most Highly Correlated Transcripts

21795

SCP superfamily
0.8552

23113

hypothetical protein
0.8388

23624

SCP superfamily
0.8364

263313

Peptidase_M8 superfamily
0.8311

bd945

(bd945) COG3899
0.8278

bd954

(bd954) NA
0.8278

24818

hypothetical protein
0.8237

24684

hypothetical protein
0.8211

25381

hypothetical protein
0.8182

23976

SBF superfamily
0.8096

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 91.1174 2.31E-21 509 - 646 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available AT4G33730.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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