13551 Uup
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13551 chr_3 Uup 807291 809625 + Uup

Synonyms

NCBI ID Ensembl Genomes exon ID
7444748 Thaps13551.3, Thaps13551.2, Thaps13551.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0041

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0088
 0.37

Most Highly Correlated Transcripts

bd1807

(bd1807) RRS1 superfamily
0.9056

268062

PRK14293
0.8883

6760

(Tp_sigma70.7) regulator [Rayko]
0.8824

511

(GBP1) PRK09601
0.863

36429

TLC
0.8624

28100

DHBP_synthase
0.8513

22694

Mpv17_PMP22
0.8496

268270

Patched
0.8486

4524

DHQS
0.8481

40001

PRK05433
0.8452

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 124.483 5.28E-33 396 - 590 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 124.483 5.28E-33 396 - 590 superfamily 266551
ABCF_EF-3 ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a... cl17201 124.483 5.28E-33 396 - 590 specific 213188
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 124.483 5.28E-33 396 - 590 superfamily 266551
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 81.4695 2.13E-18 288 - 372 superfamily 257346
ABC_tran_2 superfamily ABC transporter; This domain is related to pfam00005. - 81.4695 2.13E-18 288 - 372 superfamily 257346
Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction... - 446.312 2.17E-148 61 - 590 multi-dom 223562

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16142 PHATRDRAFT_16142 147136 285520 66965 Cre06.g271850.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 GO:0004298 GO:0004299 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0004298

threonine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.
GO Category: 
MF

GO:0004299

NA

Details: 
NA
GO Category: 
NA

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