1385 DUF4137
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1385 chr_1 DUF4137 1374478 1375950 + DUF4137

Synonyms

NCBI ID Ensembl Genomes exon ID
7442892 Thaps1385.3, Thaps1385.2, Thaps1385.1, Thaps1385.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0028

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0117
 0.49

Most Highly Correlated Transcripts

34773

ALG3 superfamily
0.9008

18469

FkpA
0.8901

21168

hypothetical protein
0.8857

261400

NA
0.8856

263536

P4Hc
0.8848

2488

hypothetical protein
0.8827

7191

Aldo_ket_red
0.8817

17707

NADB_Rossmann superfamily
0.8807

4876

hypothetical protein
0.8794

38285

(PMSR1) MsrA
0.8786

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DUF4137 SBF-like CPA transporter family (DUF4137); These family members are membrane transporter proteins... cl19217 214.32 1.07E-65 90 - 406 specific 257908
SBF superfamily Sodium Bile acid symporter family; This family consists of Na+/bile acid co-transporters. These... - 214.32 1.07E-65 90 - 406 superfamily 267570

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_36253 PHATRDRAFT_36253 180844 159047 98381 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006814 GO:0008508 GO:0016020 -

GO:0006814

sodium ion transport

Details: 
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0008508

bile acid:sodium symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in).
GO Category: 
MF

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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