16236 Nuc_sug_transp
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16236 chr_1 Nuc_sug_transp 2346041 2347330 + Nuc_sug_transp

Synonyms

NCBI ID Ensembl Genomes exon ID
7453424 Thaps16236.1, Thaps16236.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0085

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0256
 0.42

Most Highly Correlated Transcripts

5074

hypothetical protein
0.9103

bd1949

(bd1949) NA
0.9044

3318

hypothetical protein
0.9019

6504

CDP-OH_P_transf superfamily
0.8977

18462

EMP24_GP25L
0.8971

39497

Sar1
0.8961

6983

hypothetical protein
0.8959

25040

NA
0.895

10201

hypothetical protein
0.894

1934

hypothetical protein
0.8903

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
nst superfamily UDP-galactose transporter; The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-... - 90.8772 2.14E-21 161 - 403 superfamily 129885
Nuc_sug_transp Nucleotide-sugar transporter; This family of membrane proteins transport nucleotide sugars from the... - 150.532 1.55E-42 156 - 396 multi-dom 252406

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22739 PHATRDRAFT_22739 180080 226750 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005338 GO:0015780 GO:0016021 GO:0000139 GO:0005351 GO:0008643 -

GO:0005338

nucleotide-sugar transmembrane transporter activity

Details: 
Catalysis of the transfer of a nucleotide-sugar from one side of the membrane to the other. A nucleotide-sugar is any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
MF

GO:0015780

nucleotide-sugar transport

Details: 
The directed movement of nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Nucleotide-sugars are any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0000139

Golgi membrane

Details: 
The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO Category: 
CC

GO:0005351

sugar:hydrogen symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in).
GO Category: 
MF

GO:0008643

carbohydrate transport

Details: 
The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
GO Category: 
BP

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