16947 DEXDc superfamilyThalassiosira pseudonana

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
16947	chr_20	DEXDc superfamily	262766	264684	+	DEXDc superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448515	Thaps16947.2, Thaps16947.3, Thaps16947.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0271

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0196	0.36	0.00000075 0.45

Most Highly Correlated Transcripts

37786 SrmB 0.9038	268130 hypothetical protein 0.8949	12971 WD40 superfamily 0.8849	31516 SIK1 0.8848	22685 COG2520 0.8832	39924 (TopoII_1) gyrB 0.8829
14890 Cupin_8 superfamily 0.8791	23336 SRP40_C superfamily 0.8788	268252 Utp21 superfamily 0.8785	37748 SpoVK 0.8775

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HELICc superfamily	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	99.6196	1.35E-24	403 - 519	superfamily	238034
HELICc superfamily	Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast...	-	99.6196	1.35E-24	403 - 519	superfamily	238034
DEXDc superfamily	DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA...	-	205.411	2.98E-62	113 - 368	superfamily	266587
DEXDc	DEAD-like helicases superfamily; DEAD-like helicases superfamily.	-	126.453	1.49E-33	123 - 386	multi-dom	214692

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 GO:0005524 GO:0008026 GO:0004386 GO:0000810 GO:0004787 GO:0008722 GO:0008758 GO:0008796 GO:0008828 GO:0016462 GO:0016818 GO:0019176 GO:0019177 -

GO:0003676

nucleic acid binding

Details:

Interacting selectively and non-covalently with any nucleic acid.

GO Category:

GO:0005524

ATP binding

Details:

Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.

GO Category:

GO:0008026

ATP-dependent helicase activity

Details:

Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.

GO Category:

GO:0004386

helicase activity

Details:

Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.

GO Category:

GO:0000810

diacylglycerol diphosphate phosphatase activity

Details:

Catalysis of the reaction: a 1,2-diacyl-sn-glycerol 3-diphosphate + H2O = a 1,2-diacyl-sn-glycerol 3-phosphate + phosphate.

GO Category:

GO:0004787

thiamine-pyrophosphatase activity

Details:

Catalysis of the reaction: TDP + H2O = TMP + phosphate.

GO Category:

GO:0008722

Details:

GO Category:

GO:0008758

UDP-2,3-diacylglucosamine hydrolase activity

Details:

Catalysis of the reaction: H2O + UDP-2,3-bis(3-hydroxymyristoyl)glucosamine = 2,3-bis(3-hydroxymyristoyl)-beta-D-glucosaminyl 1-phosphate + UMP.

GO Category:

GO:0008796

bis(5'-nucleosyl)-tetraphosphatase activity

Details:

Catalysis of the hydrolysis of P(1),P(4)-bis(5'-nucleosyl)tetraphosphate into two nucleotides.

GO Category:

GO:0008828

dATP pyrophosphohydrolase activity

Details:

Catalysis of the reaction: deoxy-ATP + H2O = dAMP + diphosphate.

GO Category:

GO:0016462

pyrophosphatase activity

Details:

Catalysis of the hydrolysis of a pyrophosphate bond between two phosphate groups, leaving one phosphate on each of the two fragments.

GO Category:

GO:0016818

hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Details:

Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.

GO Category:

GO:0019176

dihydroneopterin monophosphate phosphatase activity

Details:

Catalysis of the reaction: dihydroneopterin monophosphate = dihydroneopterin + phosphate.

GO Category:

GO:0019177

dihydroneopterin triphosphate pyrophosphohydrolase activity

Details:

Catalysis of the reaction: dihydroneopterin triphosphate = dihydroneopterin phosphate + diphosphate.

GO Category:

16947 DEXDc superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Synonyms

Hierarchical Clustering

Motif-Guided Biclusters

Most Highly Correlated Transcripts

Conserved Domains

Homologs in Other Species

KEGG

GO Terms

GO:0003676

GO:0005524

GO:0008026

GO:0004386

GO:0000810

GO:0004787

GO:0008722

GO:0008758

GO:0008796

GO:0008828

GO:0016462

GO:0016818

GO:0019176

GO:0019177

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